PrivacyResources
ElectronicFrontierFoundation
Prism-Break
AccessNow
ResetTheNet
EncryptAllTheThings
StopBadWare
SpamHaus
AntiOnline (forum)
FreedomPress (news)
InfoSecurityMagazine (news)
TorrentFreak (news)
SecurityZap (news)
Security Tracker (news)
LetsEncrypt (free SSL Certificate)
Twister (secure p2p twitter alternative)
Peepeth (anti censor, blockchain powered blogging)
CheckShortUrl (Check shortened urls)

Software
VeraCrypt - Best Encryption Software
TrueCrypt - 2nd Best Encryption Software
GuardianProject - Different Apps to Secure yourself
Eraser - Secure Erase Files
BleachBit - Clean junk to free disk space and to maintain privacy
KeepassXS - Password manager
Enhanced Mitigation Experience Toolkit - Secure Windows
IpFire - An Open Source Firewall Distribution
Gpg4Win - ... for file and email encryption.
ResistSurveillance - Free tool to detect gov Trojans
RoutingPacketsIsNotACrime - Bypassing UK Internet Censorship
TrafficWatcher
PrivacyBadger (browser plugin)
Nixory - free and open source antispyware tool written in Python/PyGTK aimed at removing malicious tracking cookies from your browser.
Asrar - Mujahideen Encryption Software

Proxy/VPN/Anonymous Software
BarbaTunnel
TorProject
FreeLan
Proxyblind
EncryptLine
CryptoStorm

PHONE / GSM
Ostel - (encrypted phone calls)
RedPhone - (encrypted phone calls)
Signal - (encrypted messaging and phone calls) also desktop

Surespot - (encrypted messaging)
Wickr - (encrypted messaging) also desktop
ChatSecure - (encrypted messaging)
CyberDust - (encrypted messaging)
Brair - (p2p encrypted messaging) also desktop
Tox - (p2p encrypted mesaging) also desktop
OpenWhisperSystems